Detailed information of SNP:
|
SNP ID:
sf0124699631(Gbrowse)
Chromosome: chr01 Position: 24699631 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1314 | 72.45% | 27.55% |
| All Indica | 798 | 98.62% | 1.38% |
| All Japonica | 394 | 15.48% | 84.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 260 | 1.15% | 98.85% |
| Tropical Japonica | 79 | 67.09% | 32.91% |
| Japonica Intermediate | 55 | 9.09% | 90.91% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124699631 | T->C | LOC_Os01g43240(LOC_Os01g43240.1) | INTRON |