Detailed information of SNP:
|
SNP ID:
sf0124876256(Gbrowse)
Chromosome: chr01 Position: 24876256 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 84.47% | 15.53% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 495 | 61.41% | 38.59% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 333 | 54.05% | 45.95% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124876256 | T->C | INTERGENIC | None |