Detailed information of SNP:
|
SNP ID:
sf0124878545(Gbrowse)
Chromosome: chr01 Position: 24878545 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 59.35% | 40.65% |
| All Indica | 798 | 47.12% | 52.88% |
| All Japonica | 496 | 86.49% | 13.51% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 59.47% | 40.53% |
| Indica II | 213 | 51.17% | 48.83% |
| Indica Intermediate | 210 | 20.95% | 79.05% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124878545 | C->A | INTERGENIC | None |