Detailed information of SNP:
|
SNP ID:
sf0124881867(Gbrowse)
Chromosome: chr01 Position: 24881867 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 80.17% | 19.83% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 486 | 44.86% | 55.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 28.70% | 71.30% |
| Tropical Japonica | 90 | 91.11% | 8.89% |
| Japonica Intermediate | 65 | 63.08% | 36.92% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124881867 | A->G | INTERGENIC | None |