Detailed information of SNP:
|
SNP ID:
sf0124890893(Gbrowse)
Chromosome: chr01 Position: 24890893 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 76.93% | 23.07% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 466 | 33.26% | 66.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 319 | 16.61% | 83.39% |
| Tropical Japonica | 85 | 88.24% | 11.76% |
| Japonica Intermediate | 62 | 43.55% | 56.45% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124890893 | A->G | INTERGENIC | None |