Detailed information of SNP:
SNP ID:
sf0125024664(Gbrowse)
Chromosome: chr01 Position: 25024664 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 52.26% | 47.74% |
All Indica | 798 | 77.57% | 22.43% |
All Japonica | 497 | 7.04% | 92.96% |
Aus | 67 | 83.58% | 16.42% |
Indica I | 374 | 62.03% | 37.97% |
Indica II | 213 | 98.59% | 1.41% |
Indica Intermediate | 211 | 83.89% | 16.11% |
Temperate Japonica | 335 | 1.49% | 98.51% |
Tropical Japonica | 94 | 28.72% | 71.28% |
Japonica Intermediate | 68 | 4.41% | 95.59% |
Group VI/Aromatic | 14 | 14.29% | 85.71% |
Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0125024664 | T->G | INTERGENIC | None |