Detailed information of SNP:



SNP ID: sf0125024664(Gbrowse)

Chromosome: chr01

Position: 25024664
Major allele: G

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1418 52.26% 47.74%
All Indica798 77.57% 22.43%
All Japonica497 7.04% 92.96%
Aus67 83.58% 16.42%
Indica I374 62.03% 37.97%
Indica II213 98.59% 1.41%
Indica Intermediate211 83.89% 16.11%
Temperate Japonica335 1.49% 98.51%
Tropical Japonica94 28.72% 71.28%
Japonica Intermediate68 4.41% 95.59%
Group VI/Aromatic14 14.29% 85.71%
Intermediate42 69.05% 30.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0125024664 T->G INTERGENIC None