Detailed information of SNP:
|
SNP ID:
sf0125036518(Gbrowse)
Chromosome: chr01 Position: 25036518 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 81.45% | 18.55% |
| All Indica | 798 | 77.57% | 22.43% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 62.67% | 37.33% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125036518 | C->T | INTERGENIC | None |