Detailed information of SNP:
|
SNP ID:
sf0125112394(Gbrowse)
Chromosome: chr01 Position: 25112394 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 64.86% | 35.14% |
| All Indica | 798 | 40.23% | 59.77% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 62.40% | 37.60% |
| Indica II | 213 | 12.21% | 87.79% |
| Indica Intermediate | 210 | 29.05% | 70.95% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125112394 | G->A | INTERGENIC | None |