Detailed information of SNP:
|
SNP ID:
sf0125126282(Gbrowse)
Chromosome: chr01 Position: 25126282 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 70.56% | 29.44% |
| All Indica | 797 | 51.82% | 48.18% |
| All Japonica | 493 | 99.59% | 0.41% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 39.84% | 60.16% |
| Indica II | 212 | 54.25% | 45.75% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 97.78% | 2.22% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125126282 | T->A | INTERGENIC | None |