Detailed information of SNP:
|
SNP ID:
sf0125129444(Gbrowse)
Chromosome: chr01 Position: 25129444 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 76.47% | 23.53% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 489 | 36.20% | 63.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 328 | 17.07% | 82.93% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 67 | 50.75% | 49.25% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125129444 | T->C | INTERGENIC | None |