Detailed information of SNP:
|
SNP ID:
sf0125132967(Gbrowse)
Chromosome: chr01 Position: 25132967 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.27% | 40.73% |
| All Indica | 799 | 89.86% | 10.14% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125132967 | C->T | LOC_Os01g43870(LOC_Os01g43870.5) | INTRON |
| sf0125132967 | C->T | LOC_Os01g43870(LOC_Os01g43870.4) | INTRON |
| sf0125132967 | C->T | LOC_Os01g43870(LOC_Os01g43870.6) | INTRON |
| sf0125132967 | C->T | LOC_Os01g43870(LOC_Os01g43870.1) | INTRON |
| sf0125132967 | C->T | LOC_Os01g43870(LOC_Os01g43870.3) | INTRON |
| sf0125132967 | C->T | LOC_Os01g43870(LOC_Os01g43870.2) | INTRON |