Detailed information of SNP:
|
SNP ID:
sf0125146235(Gbrowse)
Chromosome: chr01 Position: 25146235 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 95.42% | 4.58% |
| All Indica | 777 | 92.28% | 7.72% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 90.06% | 9.94% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 205 | 93.17% | 6.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125146235 | G->A | LOC_Os01g43895(LOC_Os01g43895.1) | UTR_5_PRIME |