Detailed information of SNP:
|
SNP ID:
sf0125148136(Gbrowse)
Chromosome: chr01 Position: 25148136 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 57.91% | 42.09% |
| All Indica | 797 | 56.21% | 43.79% |
| All Japonica | 496 | 67.74% | 32.26% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 30.75% | 69.25% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 210 | 67.14% | 32.86% |
| Temperate Japonica | 335 | 82.09% | 17.91% |
| Tropical Japonica | 93 | 24.73% | 75.27% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125148136 | T->C | INTERGENIC | None |