Detailed information of SNP:
|
SNP ID:
sf0125313814(Gbrowse)
Chromosome: chr01 Position: 25313814 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 57.70% | 42.30% |
| All Indica | 797 | 28.36% | 71.64% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 47.33% | 52.67% |
| Indica II | 212 | 3.30% | 96.70% |
| Indica Intermediate | 211 | 19.91% | 80.09% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125313814 | C->T | INTERGENIC | None |