Detailed information of SNP:
|
SNP ID:
sf0125315645(Gbrowse)
Chromosome: chr01 Position: 25315645 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 78.15% | 21.85% |
| All Indica | 799 | 64.58% | 35.42% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 37.87% | 62.13% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125315645 | G->A | INTERGENIC | None |