Detailed information of SNP:
|
SNP ID:
sf0125351298(Gbrowse)
Chromosome: chr01 Position: 25351298 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 94.36% | 5.64% |
| All Indica | 799 | 90.86% | 9.14% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125351298 | C->A | INTERGENIC | None |