Detailed information of SNP:
|
SNP ID:
sf0125382049(Gbrowse)
Chromosome: chr01 Position: 25382049 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 81.80% | 18.20% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 475 | 52.00% | 48.00% |
| Aus | 62 | 93.55% | 6.45% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 326 | 44.48% | 55.52% |
| Tropical Japonica | 87 | 82.76% | 17.24% |
| Japonica Intermediate | 62 | 48.39% | 51.61% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125382049 | A->C | LOC_Os01g44260(LOC_Os01g44260.1) | UTR_5_PRIME |