Detailed information of SNP:
|
SNP ID:
sf0125386475(Gbrowse)
Chromosome: chr01 Position: 25386475 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1340 | 96.49% | 3.51% |
| All Indica | 723 | 93.78% | 6.22% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 341 | 97.65% | 2.35% |
| Indica II | 194 | 86.60% | 13.40% |
| Indica Intermediate | 188 | 94.15% | 5.85% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125386475 | A->G | INTERGENIC | None |