Detailed information of SNP:
|
SNP ID:
sf0125459784(Gbrowse)
Chromosome: chr01 Position: 25459784 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 86.08% | 13.92% |
| All Indica | 796 | 76.38% | 23.62% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 55.11% | 44.89% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125459784 | G->A | INTERGENIC | None |