Detailed information of SNP:
|
SNP ID:
sf0125478211(Gbrowse)
Chromosome: chr01 Position: 25478211 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 67.79% | 32.21% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 497 | 28.97% | 71.03% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 29.55% | 70.45% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125478211 | T->C | LOC_Os01g44430(LOC_Os01g44430.1) | Non-Synonymous SNP |