Detailed information of SNP:
|
SNP ID:
sf0125509424(Gbrowse)
Chromosome: chr01 Position: 25509424 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 82.23% | 17.77% |
| All Indica | 798 | 69.67% | 30.33% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 44.80% | 55.20% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125509424 | T->C | INTERGENIC | None |