Detailed information of SNP:
|
SNP ID:
sf0125633034(Gbrowse)
Chromosome: chr01 Position: 25633034 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 72.06% | 27.94% |
| All Indica | 792 | 92.42% | 7.58% |
| All Japonica | 495 | 35.76% | 64.24% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 92.20% | 7.80% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 207 | 94.69% | 5.31% |
| Temperate Japonica | 334 | 14.37% | 85.63% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 67 | 62.69% | 37.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125633034 | A->G | LOC_Os01g45174(LOC_Os01g45174.1) | Non-Synonymous SNP |