Detailed information of SNP:
|
SNP ID:
sf0125635197(Gbrowse)
Chromosome: chr01 Position: 25635197 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 73.98% | 26.02% |
| All Indica | 798 | 95.61% | 4.39% |
| All Japonica | 497 | 35.81% | 64.19% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 14.63% | 85.37% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125635197 | A->C | INTERGENIC | None |