Detailed information of SNP:
|
SNP ID:
sf0125635589(Gbrowse)
Chromosome: chr01 Position: 25635589 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 55.27% | 44.73% |
| All Indica | 786 | 94.78% | 5.22% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 198 | 93.43% | 6.57% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125635589 | T->C | INTERGENIC | None |