Detailed information of SNP:
|
SNP ID:
sf0125648766(Gbrowse)
Chromosome: chr01 Position: 25648766 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 65.52% | 34.48% |
| All Indica | 756 | 72.75% | 27.25% |
| All Japonica | 496 | 65.12% | 34.88% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 334 | 51.80% | 48.20% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 81.34% | 18.66% |
| Temperate Japonica | 334 | 84.43% | 15.57% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125648766 | T->A | INTERGENIC | None |