Detailed information of SNP:
|
SNP ID:
sf0125686501(Gbrowse)
Chromosome: chr01 Position: 25686501 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 89.25% | 10.75% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 493 | 84.79% | 15.21% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 92 | 44.57% | 55.43% |
| Japonica Intermediate | 66 | 77.27% | 22.73% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125686501 | G->A | INTERGENIC | None |