Detailed information of SNP:
|
SNP ID:
sf0125782777(Gbrowse)
Chromosome: chr01 Position: 25782777 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 59.52% | 40.48% |
| All Indica | 770 | 33.25% | 66.75% |
| All Japonica | 491 | 95.52% | 4.48% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 368 | 54.08% | 45.92% |
| Indica II | 202 | 6.44% | 93.56% |
| Indica Intermediate | 200 | 22.00% | 78.00% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 89 | 86.52% | 13.48% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125782777 | G->A | INTERGENIC | None |