Detailed information of SNP:
|
SNP ID:
sf0125859101(Gbrowse)
Chromosome: chr01 Position: 25859101 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1342 | 66.77% | 33.23% |
| All Indica | 752 | 93.09% | 6.91% |
| All Japonica | 478 | 25.10% | 74.90% |
| Aus | 60 | 60.00% | 40.00% |
| Indica I | 354 | 93.22% | 6.78% |
| Indica II | 198 | 94.95% | 5.05% |
| Indica Intermediate | 200 | 91.00% | 9.00% |
| Temperate Japonica | 331 | 3.63% | 96.37% |
| Tropical Japonica | 81 | 83.95% | 16.05% |
| Japonica Intermediate | 66 | 60.61% | 39.39% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125859101 | G->T | INTERGENIC | None |