Detailed information of SNP:
|
SNP ID:
sf0125865707(Gbrowse)
Chromosome: chr01 Position: 25865707 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 75.02% | 24.98% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 496 | 30.65% | 69.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 5.39% | 94.61% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125865707 | T->C | LOC_Os01g45550(LOC_Os01g45550.1) | INTRON |
| sf0125865707 | T->C | LOC_Os01g45550(LOC_Os01g45550.3) | INTRON |
| sf0125865707 | T->C | LOC_Os01g45550(LOC_Os01g45550.2) | INTRON |