Detailed information of SNP:
|
SNP ID:
sf0125966024(Gbrowse)
Chromosome: chr01 Position: 25966024 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 83.02% | 16.98% |
| All Indica | 799 | 72.09% | 27.91% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 48.00% | 52.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0125966024 | A->C | INTERGENIC | None |