Detailed information of SNP:
|
SNP ID:
sf0126098316(Gbrowse)
Chromosome: chr01 Position: 26098316 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.81% | 46.19% |
| All Indica | 799 | 27.41% | 72.59% |
| All Japonica | 496 | 93.35% | 6.65% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 50.67% | 49.33% |
| Indica II | 213 | 1.41% | 98.59% |
| Indica Intermediate | 211 | 12.32% | 87.68% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0126098316 | G->A | INTERGENIC | None |