Detailed information of SNP:
|
SNP ID:
sf0126147254(Gbrowse)
Chromosome: chr01 Position: 26147254 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 84.58% | 15.42% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 493 | 73.43% | 26.57% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 332 | 88.55% | 11.45% |
| Tropical Japonica | 93 | 37.63% | 62.37% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0126147254 | A->G | LOC_Os01g46000(LOC_Os01g46000.1) | Non-Synonymous SNP |