Detailed information of SNP:
|
SNP ID:
sf0126249184(Gbrowse)
Chromosome: chr01 Position: 26249184 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1341 | 93.74% | 6.26% |
| All Indica | 790 | 99.62% | 0.38% |
| All Japonica | 428 | 81.31% | 18.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 271 | 71.96% | 28.04% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 93.75% | 6.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0126249184 | G->A | LOC_Os01g46169(LOC_Os01g46169.1) | INTRON |
| sf0126249184 | G->A | LOC_Os01g46169(LOC_Os01g46169.3) | INTRON |
| sf0126249184 | G->A | LOC_Os01g46169(LOC_Os01g46169.2) | INTRON |