Detailed information of SNP:
|
SNP ID:
sf0126363793(Gbrowse)
Chromosome: chr01 Position: 26363793 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 94.07% | 5.93% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 494 | 96.96% | 3.04% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 89.01% | 10.99% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0126363793 | C->T | LOC_Os01g46340(LOC_Os01g46340.1) | Synonymous |