Detailed information of SNP:
|
SNP ID:
sf0126377660(Gbrowse)
Chromosome: chr01 Position: 26377660 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 68.74% | 31.26% |
| All Indica | 789 | 93.92% | 6.08% |
| All Japonica | 487 | 23.20% | 76.80% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 372 | 89.78% | 10.22% |
| Indica II | 208 | 98.08% | 1.92% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 88 | 86.36% | 13.64% |
| Japonica Intermediate | 64 | 28.12% | 71.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0126377660 | A->G | INTERGENIC | None |