Detailed information of SNP:
|
SNP ID:
sf0126417118(Gbrowse)
Chromosome: chr01 Position: 26417118 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 94.64% | 5.36% |
| All Indica | 798 | 95.74% | 4.26% |
| All Japonica | 496 | 92.34% | 7.66% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 61.29% | 38.71% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0126417118 | G->T | INTERGENIC | None |