Detailed information of SNP:



SNP ID: sf0126513354(Gbrowse)

Chromosome: chr01

Position: 26513354
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1416 96.33% 3.67%
All Indica799 99.75% 0.25%
All Japonica495 90.10% 9.90%
Aus66 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica334 98.50% 1.50%
Tropical Japonica94 59.57% 40.43%
Japonica Intermediate67 91.04% 8.96%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0126513354 G->A INTERGENIC None