Detailed information of SNP:
|
SNP ID:
sf0126513354(Gbrowse)
Chromosome: chr01 Position: 26513354 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 96.33% | 3.67% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 495 | 90.10% | 9.90% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0126513354 | G->A | INTERGENIC | None |