Detailed information of SNP:
|
SNP ID:
sf0126648524(Gbrowse)
Chromosome: chr01 Position: 26648524 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1364 | 94.57% | 5.43% |
| All Indica | 767 | 96.48% | 3.52% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 46 | 45.65% | 54.35% |
| Indica I | 368 | 97.01% | 2.99% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 186 | 93.01% | 6.99% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0126648524 | A->G | INTERGENIC | None |