Detailed information of SNP:
|
SNP ID:
sf0126649120(Gbrowse)
Chromosome: chr01 Position: 26649120 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 55.29% | 44.71% |
| All Indica | 798 | 91.23% | 8.77% |
| All Japonica | 490 | 4.49% | 95.51% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 79.52% | 20.48% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 89 | 12.36% | 87.64% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0126649120 | C->T | INTERGENIC | None |