Detailed information of SNP:



SNP ID: sf0126771479(Gbrowse)

Chromosome: chr01

Position: 26771479
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1415 71.24% 28.76%
All Indica799 99.75% 0.25%
All Japonica495 20.40% 79.60%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.06% 0.94%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 14.03% 85.97%
Tropical Japonica93 37.63% 62.37%
Japonica Intermediate67 28.36% 71.64%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 72.50% 27.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0126771479 A->G INTERGENIC None