Detailed information of SNP:
|
SNP ID:
sf0126771479(Gbrowse)
Chromosome: chr01 Position: 26771479 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 71.24% | 28.76% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 495 | 20.40% | 79.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 14.03% | 85.97% |
| Tropical Japonica | 93 | 37.63% | 62.37% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0126771479 | A->G | INTERGENIC | None |