Detailed information of SNP:
|
SNP ID:
sf0126775521(Gbrowse)
Chromosome: chr01 Position: 26775521 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 58.12% | 41.88% |
| All Indica | 799 | 90.11% | 9.89% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 375 | 80.53% | 19.47% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0126775521 | A->T | INTERGENIC | None |