Detailed information of SNP:
|
SNP ID:
sf0126827375(Gbrowse)
Chromosome: chr01 Position: 26827375 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 55.07% | 44.93% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 490 | 0.61% | 99.39% |
| Aus | 66 | 45.45% | 54.55% |
| Indica I | 375 | 81.33% | 18.67% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 88 | 2.27% | 97.73% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0126827375 | A->G | INTERGENIC | None |