Detailed information of SNP:
|
SNP ID:
sf0127068628(Gbrowse)
Chromosome: chr01 Position: 27068628 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 96.21% | 3.79% |
| All Indica | 756 | 93.39% | 6.61% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 361 | 99.72% | 0.28% |
| Indica II | 193 | 76.68% | 23.32% |
| Indica Intermediate | 202 | 98.02% | 1.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127068628 | C->T | INTERGENIC | None |