Detailed information of SNP:
|
SNP ID:
sf0127077164(Gbrowse)
Chromosome: chr01 Position: 27077164 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 98.83% | 1.17% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 450 | 96.67% | 3.33% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 320 | 98.75% | 1.25% |
| Tropical Japonica | 76 | 97.37% | 2.63% |
| Japonica Intermediate | 54 | 83.33% | 16.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127077164 | C->T | INTERGENIC | None |