Detailed information of SNP:
|
SNP ID:
sf0127207106(Gbrowse)
Chromosome: chr01 Position: 27207106 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 63.41% | 36.59% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 493 | 7.71% | 92.29% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 333 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 66 | 24.24% | 75.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127207106 | T->C | INTERGENIC | None |