Detailed information of SNP:
|
SNP ID:
sf0127314372(Gbrowse)
Chromosome: chr01 Position: 27314372 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 93.88% | 6.12% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 470 | 82.55% | 17.45% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 314 | 74.84% | 25.16% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127314372 | G->T | INTERGENIC | None |