Detailed information of SNP:
|
SNP ID:
sf0127315603(Gbrowse)
Chromosome: chr01 Position: 27315603 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1367 | 58.08% | 41.92% |
| All Indica | 748 | 98.53% | 1.47% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 66 | 50.00% | 50.00% |
| Indica I | 345 | 98.55% | 1.45% |
| Indica II | 206 | 98.06% | 1.94% |
| Indica Intermediate | 197 | 98.98% | 1.02% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127315603 | C->T | INTERGENIC | None |