Detailed information of SNP:
|
SNP ID:
sf0127318677(Gbrowse)
Chromosome: chr01 Position: 27318677 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 92.81% | 7.19% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 469 | 79.74% | 20.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 312 | 71.15% | 28.85% |
| Tropical Japonica | 90 | 97.78% | 2.22% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127318677 | A->G | LOC_Os01g47750(LOC_Os01g47750.1) | INTRON |