Detailed information of SNP:
|
SNP ID:
sf0127363915(Gbrowse)
Chromosome: chr01 Position: 27363915 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 56.24% | 43.76% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127363915 | A->T | INTERGENIC | None |