Detailed information of SNP:
|
SNP ID:
sf0127395076(Gbrowse)
Chromosome: chr01 Position: 27395076 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 62.59% | 37.41% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 496 | 5.44% | 94.56% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127395076 | T->C | LOC_Os01g47850(LOC_Os01g47850.1) | Synonymous |